11 |
jpm |
1 |
<?php
|
121 |
jpm |
2 |
//declare(encoding='UTF-8');
|
11 |
jpm |
3 |
/**
|
|
|
4 |
* Exemple de lancement du script : :
|
121 |
jpm |
5 |
* /opt/lampp/bin/php cli.php bdtfx -a chargerTous
|
|
|
6 |
*
|
11 |
jpm |
7 |
* @category php 5.2
|
121 |
jpm |
8 |
* @package eFlore/Scripts
|
11 |
jpm |
9 |
* @author Jennifer DHÉ <jennifer@tela-botanica.org>
|
|
|
10 |
* @author Jean-Pascal MILCENT <jpm@tela-botanica.org>
|
|
|
11 |
* @copyright Copyright (c) 2011, Tela Botanica (accueil@tela-botanica.org)
|
|
|
12 |
* @license http://www.cecill.info/licences/Licence_CeCILL_V2-fr.txt Licence CECILL
|
|
|
13 |
* @license http://www.gnu.org/licenses/gpl.html Licence GNU-GPL
|
|
|
14 |
* @version $Id$
|
|
|
15 |
*/
|
68 |
jpm |
16 |
class Bdtfx extends EfloreScript {
|
46 |
jpm |
17 |
|
68 |
jpm |
18 |
private $table = null;
|
|
|
19 |
private $pasInsertion = 1000;
|
|
|
20 |
private $departInsertion = 0;
|
11 |
jpm |
21 |
|
|
|
22 |
protected $parametres_autorises = array(
|
105 |
jpm |
23 |
'-t' => array(false, false, 'Permet de tester le script sur un jeux réduit de données (indiquer le nombre de lignes).'));
|
11 |
jpm |
24 |
|
|
|
25 |
public function executer() {
|
46 |
jpm |
26 |
try {
|
68 |
jpm |
27 |
$this->initialiserProjet('bdtfx');
|
46 |
jpm |
28 |
|
|
|
29 |
// Lancement de l'action demandée
|
|
|
30 |
$cmd = $this->getParametre('a');
|
|
|
31 |
switch ($cmd) {
|
|
|
32 |
case 'chargerTous' :
|
|
|
33 |
$this->chargerStructureSql();
|
|
|
34 |
$this->chargerBdtfx();
|
|
|
35 |
$this->genererNomSciHtml();
|
103 |
jpm |
36 |
$this->genererDonneesTestMultiVersion();
|
46 |
jpm |
37 |
break;
|
|
|
38 |
case 'chargerStructureSql' :
|
|
|
39 |
$this->chargerStructureSql();
|
|
|
40 |
break;
|
|
|
41 |
case 'chargerBdtfx' :
|
|
|
42 |
$this->chargerBdtfx();
|
|
|
43 |
break;
|
|
|
44 |
case 'genererNomSciHtml' :
|
|
|
45 |
$this->genererNomSciHtml();
|
|
|
46 |
break;
|
103 |
jpm |
47 |
case 'genererDonneesTestMultiVersion' :
|
|
|
48 |
$this->genererDonneesTestMultiVersion();
|
|
|
49 |
break;
|
|
|
50 |
case 'supprimerDonneesTestMultiVersion' :
|
|
|
51 |
$this->supprimerDonneesTestMultiVersion();
|
|
|
52 |
break;
|
130 |
jpm |
53 |
case 'supprimerTous' :
|
|
|
54 |
$this->supprimerTous();
|
|
|
55 |
break;
|
46 |
jpm |
56 |
default :
|
|
|
57 |
throw new Exception("Erreur : la commande '$cmd' n'existe pas!");
|
|
|
58 |
}
|
|
|
59 |
} catch (Exception $e) {
|
|
|
60 |
$this->traiterErreur($e->getMessage());
|
11 |
jpm |
61 |
}
|
46 |
jpm |
62 |
}
|
11 |
jpm |
63 |
|
46 |
jpm |
64 |
private function chargerBdtfx() {
|
|
|
65 |
$chemin = Config::get('chemins.bdtfx');
|
|
|
66 |
$table = Config::get('tables.bdtfx');
|
|
|
67 |
$requete = "LOAD DATA INFILE '$chemin' ".
|
|
|
68 |
"REPLACE INTO TABLE $table ".
|
|
|
69 |
'CHARACTER SET utf8 '.
|
|
|
70 |
'FIELDS '.
|
|
|
71 |
" TERMINATED BY '\t' ".
|
|
|
72 |
" ENCLOSED BY '' ".
|
|
|
73 |
" ESCAPED BY '\\\' ".
|
|
|
74 |
'IGNORE 1 LINES';
|
68 |
jpm |
75 |
$this->getBdd()->requeter($requete);
|
46 |
jpm |
76 |
}
|
|
|
77 |
|
|
|
78 |
private function genererNomSciHtml() {
|
|
|
79 |
$this->initialiserGenerationNomsSciHtml();
|
|
|
80 |
$this->preparerTable();
|
|
|
81 |
$generateur = new GenerateurNomSciHtml();
|
|
|
82 |
$nbreTotal = $this->recupererNbTotalTuples();
|
|
|
83 |
while ($this->departInsertion < $nbreTotal) {
|
|
|
84 |
$resultat = $this->recupererTuples();
|
|
|
85 |
$nomsSciEnHtml = $generateur->generer($resultat);
|
|
|
86 |
$this->lancerRequeteModification($nomsSciEnHtml);
|
|
|
87 |
$this->departInsertion += $this->pasInsertion;
|
|
|
88 |
$this->afficherAvancement("Insertion des noms scientifique au format HTML dans la base par paquet de {$this->pasInsertion} en cours");
|
68 |
jpm |
89 |
if ($this->stopperLaBoucle($this->getParametre('t'))) break;
|
11 |
jpm |
90 |
}
|
|
|
91 |
echo "\n";
|
|
|
92 |
}
|
|
|
93 |
|
46 |
jpm |
94 |
private function initialiserGenerationNomsSciHtml() {
|
|
|
95 |
$this->table = Config::get('tables.bdtfx');
|
11 |
jpm |
96 |
}
|
|
|
97 |
|
|
|
98 |
private function preparerTable() {
|
|
|
99 |
$requete = "SHOW COLUMNS FROM {$this->table} LIKE 'nom_sci_html' ";
|
68 |
jpm |
100 |
$resultat = $this->getBdd()->recuperer($requete);
|
11 |
jpm |
101 |
if ($resultat === false) {
|
|
|
102 |
$requete = "ALTER TABLE {$this->table} ".
|
46 |
jpm |
103 |
'ADD nom_sci_html VARCHAR( 500 ) '.
|
|
|
104 |
'CHARACTER SET utf8 COLLATE utf8_general_ci NULL DEFAULT NULL ';
|
68 |
jpm |
105 |
$this->getBdd()->requeter($requete);
|
11 |
jpm |
106 |
}
|
|
|
107 |
}
|
|
|
108 |
|
|
|
109 |
private function recupererNbTotalTuples(){
|
46 |
jpm |
110 |
$requete = "SELECT count(*) AS nb FROM {$this->table} ";
|
68 |
jpm |
111 |
$resultat = $this->getBdd()->recuperer($requete);
|
46 |
jpm |
112 |
return $resultat['nb'];
|
11 |
jpm |
113 |
}
|
|
|
114 |
|
|
|
115 |
private function recupererTuples() {
|
|
|
116 |
$requete = 'SELECT num_nom, rang, nom_supra_generique, genre, epithete_infra_generique, '.
|
|
|
117 |
' epithete_sp, type_epithete, epithete_infra_sp,cultivar_groupe, '.
|
|
|
118 |
' nom_commercial, cultivar '.
|
|
|
119 |
"FROM {$this->table} ".
|
46 |
jpm |
120 |
"LIMIT {$this->departInsertion},{$this->pasInsertion} ";
|
68 |
jpm |
121 |
$resultat = $this->getBdd()->recupererTous($requete);
|
11 |
jpm |
122 |
return $resultat;
|
|
|
123 |
}
|
|
|
124 |
|
46 |
jpm |
125 |
private function lancerRequeteModification($nomsSciHtm) {
|
|
|
126 |
foreach ($nomsSciHtm as $id => $html) {
|
68 |
jpm |
127 |
$html = $this->getBdd()->proteger($html);
|
46 |
jpm |
128 |
$requete = "UPDATE {$this->table} ".
|
|
|
129 |
"SET nom_sci_html = $html ".
|
|
|
130 |
"WHERE num_nom = $id ";
|
68 |
jpm |
131 |
$resultat = $this->getBdd()->requeter($requete);
|
46 |
jpm |
132 |
if ($resultat === false) {
|
|
|
133 |
throw new Exception("Erreur d'insertion pour le tuple $id");
|
11 |
jpm |
134 |
}
|
|
|
135 |
}
|
|
|
136 |
}
|
|
|
137 |
|
103 |
jpm |
138 |
private function genererDonneesTestMultiVersion() {
|
|
|
139 |
$contenuSql = $this->recupererContenu(Config::get('chemins.structureSqlTest'));
|
|
|
140 |
$this->executerScripSql($contenuSql);
|
68 |
jpm |
141 |
|
103 |
jpm |
142 |
$table = Config::get('tables.bdtfx');
|
|
|
143 |
$tableTest = Config::get('tables.bdtfxTest');
|
|
|
144 |
$requete = "INSERT INTO $tableTest SELECT * FROM $table";
|
|
|
145 |
$this->getBdd()->requeter($requete);
|
|
|
146 |
}
|
|
|
147 |
|
|
|
148 |
private function supprimerDonneesTestMultiVersion() {
|
|
|
149 |
$tableMeta = Config::get('tables.bdtfxMeta');
|
|
|
150 |
$requete = "DELETE FROM $tableMeta WHERE guid = 'urn:lsid:tela-botanica.org:bdtfx:1.02'";
|
|
|
151 |
$this->getBdd()->requeter($requete);
|
|
|
152 |
|
|
|
153 |
$tableTest = Config::get('tables.bdtfxTest');
|
|
|
154 |
$requete = "DROP TABLE $tableTest";
|
|
|
155 |
$this->getBdd()->requeter($requete);
|
|
|
156 |
}
|
130 |
jpm |
157 |
|
|
|
158 |
private function supprimerTous() {
|
|
|
159 |
$requete = "DROP TABLE bdtfx_meta, bdtfx_v1_01, bdtfx_v1_02";
|
|
|
160 |
$this->getBdd()->requeter($requete);
|
|
|
161 |
}
|
11 |
jpm |
162 |
}
|
|
|
163 |
?>
|